SNP Profiles of PA 121 [PER]   View Data

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 Key

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_Input profile
CCCTTTGGCCCCTTCCGGCCGGTTAATT
1._GC-05-011-1-11
GGCTTTGGCCCCTTCCCCGG_TTAATT
2._GC-05-011-1-11
GGCTTTGGCCCCTTCCCCGG_TTAATT
3._PA_121_[PER]
GG___CC_TTCC_GG____
4._GC-05-011-1-11
GGCTTTGGCCCCTTCCCCGG_TTAATT
5._RUQ_1059
GGCTTTGGCC__CCCCGG___TT
6._PA_121_[PER]
GG___CC_TTCC_GG____
7._PA_121_[PER]
GG___CC_TTCC_GG____
8._RUQ_1059
GG___CC_TTCC_GG____
9._PA_121_[PER]
GG___CC_TTCC_GG____
10._PA_121_[PER]
GG___CC_TTCC_GG____
11._PA_121_[PER]
GG___CC_TTCC_GG____
12._RUQ_1059
GG________GG___TT
13._GC-05-011-1-11
CGTTTTAACCCCTTCCCGGGAATTAATT
14._PA_121_[PER]
CG___CC_TTCC_GG____
15._GC-05-011-1-11
CGTTATAGCCCCCTTTGGGGAATTAACT
16._RUQ_1059
CCAG_GGGG_AAGG_CCGGAA_AA
17._PA_121_[PER]
CG___CC_CTTT_GG____
 151617181920212223242526  
_Input profile
CCCGCCCTAAGGAAGGAAGGCCACX_XX_X
1._GC-05-011-1-11
CCCGCCCTAAGGAACCAAGGCCACX_XX_X
2._GC-05-011-1-11
CCCGCCCTAAGGAACCAAGGCCACX_XX_X
3._PA_121_[PER]
CCCG__AA_AA_AA_CCACX_XX_X
4._GC-05-011-1-11
CCCGCCCTAAGGAACCAAGG_ACX_XX_X
5._RUQ_1059
CCCGCC_AAGGAACCAAGGCCACX_XX_X
6._PA_121_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
7._PA_121_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
8._RUQ_1059
CCCG__AA_AACCAA_CCACX_XX_X
9._PA_121_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
10._PA_121_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
11._PA_121_[PER]
CCCG__AA_AACCAA__ACX_XX_X
12._RUQ_1059
CCCG____AA____ACX_XX_X
13._GC-05-011-1-11
CCCCCCCTAAGGAACCAAGGTTCCX_XX_X
14._PA_121_[PER]
CCCC__AA_AACCAA_TTCCX_XX_X
15._GC-05-011-1-11
CCGGCCCCTTGGAACCAAGGCTCCX_XX_X
16._RUQ_1059
CCCGGGAGAAGGAAGGAAGGGGACX_XX_X
17._PA_121_[PER]
CCGG__TT_AACCAA_CTCCX_XX_X

Input profile: PA_121_[PER] RUQ_1059

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._PA_121_[PER] GC-05-011-1-11

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._PA_121_[PER]

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

4._PA_121_[PER] GC-05-011-1-11

83.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

5._PA_121_[PER] RUQ_1059

80 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_121_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

7._PA_121_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

8._PA_121_[PER] RUQ_1059

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_121_[PER]

76.9 %
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

10._PA_121_[PER]

76.9 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

11._PA_121_[PER]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

12._PA_121_[PER] RUQ_1059

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._PA_121_[PER] GC-05-011-1-11

71.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_121_[PER]

65.4 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

61.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

16._PA_121_[PER] RUQ_1059

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._PA_121_[PER]

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144